| Version 13 (modified by zequi, 4 years ago) (diff) |
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ESGF Local Node Deployment Tutorial
This page shows how to deploy an ESGF Node that provides data, index and idp services and belongs to the esgf-test federation. The purpose of this node is to test the process of publication in the ESGF.
This page assumes that command are executed by the root user (not sudo).
Index
- Previous installation clean up
- Installation from scratch
- Configuration for publishing
- Known issues
- References
1. Previous installation clean up
Execute /usr/local/bin/esg-node stop in order to stop the current ESGF services (in case they are running).
[root@spock ~]# /usr/local/bin/esg-node stop
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E::::::::::::::::::::ES::::::SSSSSS:::::S GG:::::::::::::::GF::::::::FF
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EEEEEEEEEEEEEEEEEEEEEE SSSSSSSSSSSSSSS GGGGGG GGGGFFFFFFFFFFF.llnl.gov
Checking that you have root privs on spock.meteo.unican.es... [OK]
Checking requisites...
Using IP: 193.144.184.40
Stopping search services...
Using solr_workdir=/usr/local/src/esgf/workbench/esg/solr-5.5.3
Using solr_install_dir=/usr/local/solr-home/slave-8983
Using solr_data_dir=/esg/solr-index/slave-8983
Using solr_server_dir=/usr/local/solr
Using solr_logs_dir=/esg/solr-logs
Using esg_dist_url=http://esg-dn2.nsc.liu.se/esgf/dist
sudo: source: command not found
Sending stop command to Solr running on port 8983 ... waiting 5 seconds to allow Jetty process 16339 to stop gracefully.
Sending stop command to Solr running on port 8984 ... waiting 5 seconds to allow Jetty process 16554 to stop gracefully.
Stopping Globus Services for Data-Node... (GridFTP) stop_globus_services for datanode
globus-gridftp-server: unrecognized service
Stopping Globus Services for Index-Node... (MyProxy server) stop_globus_services for gateway
Stopping myproxy-server: [ OK ]
No MyProxy Process Currently Running...
Tomcat (jsvc) process is running...
stop tomcat: /usr/local/tomcat/bin/jsvc -pidfile /var/run/tomcat-jsvc.pid -stop org.apache.catalina.startup.Bootstrap
(please wait)
postmaster (pid 16024) is running...
Stopping postgresql service: [ OK ]
Stopping httpd: [ OK ]
Running shutdown hooks...
---------------------------
Running Node Services...
node type: [ data index idp compute ] (60)
---------------------------
---------------------------
Execute source /usr/local/bin/esg-purge.sh && esg-purge all
2. Installation from scratch
Change directory to /usr/local/bin/
[root@spock ~]# cd /usr/local/bin/
[root@spock bin]# wget -O esg-bootstrap http://distrib-coffee.ipsl.jussieu.fr/pub/esgf/dist/devel/esgf-installer/2.4/esg-bootstrap --no-check-certificate [root@spock bin]# chmod 555 ./esg-bootstrap [root@spock bin]# ./esg-bootstrap
Your directory should look like this:
[root@spock bin]# ls esg-bootstrap esg-functions esg-init esg-node esg-purge.sh jar_security_scan setup-autoinstall
Check your node's version:
[root@spock bin]# ./esg-node --version Version: v2.4.24-master-release Release: Bifrost Earth Systems Grid Federation (http://esgf.llnl.gov) ESGF Node Installation Script
Set node's type:
[root@spock bin]# ./esg-node --set-type idp data index node type set to: [ index data idp ] (28)
Install the node:
[root@spock bin]# ./esg-node --install
Please select the ESGF distribution mirror for this installation (fastest to slowest):
-------------------------------------------
[1] http://dist.ceda.ac.uk/esgf
[2] http://esg-dn2.nsc.liu.se/esgf
[3] http://aims1.llnl.gov/esgf
[4] http://distrib-coffee.ipsl.jussieu.fr/pub/esgf
-------------------------------------------
select [1] > 1
Are you ready to begin the installation? [Y/n]
Configured host IP address does not match available IPs...
Detected multiple IP addresses bound to this host...
Please select the IP address to use for this installation
-------------------------------------------
[0] : 193.xxx.xxx.xxx
[1] : 192.xxx.xxx.xxx
-------------------------------------------
select [] > (select the one that fits your case)
Welcome to the ESGF Node installation program! :-) What is the fully qualified domain name of this node? [spock.meteo.unican.es]: What is the admin password to use for this installation? (alpha-numeric only) []: Please re-enter password: What is the name of your organization? [unican]: Please give this node a "short" name: []: unican Please give this node a more descriptive "long" name []: unican What is the namespace to use for this node? (set to your reverse fqdn - Ex: "gov.llnl") [es.unican.meteo]: What peer group(s) will this node participate in? (esgf-test|esgf-prod) [esgf-test]: What is the default peer to this node? [spock.meteo.unican.es]: What is the hostname of the node do you plan to publish to? [spock.meteo.unican.es]: What email address should notifications be sent as? []: Is the database external to this node? [y/N]: Please enter the database connection string... (form: postgresql://[username]@[host]:[port]/esgcet) What is the database connection string? [postgresql://dbsuper@localhost:5432/esgcet]: postgresql:// entered: postgresql://dbsuper@localhost:5432/esgcet What is the (low priv) db account for publisher? [esgcet]: What is the db password for publisher user (esgcet)? []:
Enter password for postgres user dbsuper: Re-enter password for postgres user dbsuper: Please Enter PostgreSQL port number [5432]:>
Would you like a "system" or "user" publisher configuration:
-------------------------------------------
*[1] : System
[2] : User
-------------------------------------------
[C] : (Custom)
-------------------------------------------
select [1] >
You have selected: 1
Publisher configuration file -> [/esg/config/esgcet/esg.ini]
Is this correct? [Y/n]
Your publisher configuration file will be: /esg/config/esgcet/esg.ini
What is your organization's id? [unican]:
Would you like to use the DN: (OU=ESGF.ORG, O=ESGF) ? [Y/n]: ... Please enter the password for this keystore :
Enter a single ip address which would be cleared to access admin restricted pages. You will be prompted if you want to enter more ip-addresses Do you wish to allow further ips? y/n n
Create user credentials Please enter username for tomcat [dnode_user]: Please enter password for user, "dnode_user" [********]: Would you like to add another user? [y/N]:
Please Enter the public (i.e. routable) IP address of this host [193.xxx.xxx.xxx]:> Do you wish to use an external IDP peer?(N/y):
Do you want to continue with the Globus installation and setup? [Y/n] : Do you want to register the MyProxy server with Globus? [Y/n]: Please provide a Globus username []: YOUR-GLOBUS-USER Globus password []:
Known issues
#error "Psycopg requires PostgreSQL client library (libpq) >= 9.1
This error occurs sometimes during installation but removing the node and installing it from scratch seems to solve it...
Traceback (most recent call last):
File "setup.py", line 110, in <module>
""",
File "/usr/local/uvcdat/2.2.0/lib/python2.7/distutils/core.py", line 111, in setup
_setup_distribution = dist = klass(attrs)
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/dist.py", line 239, in __init__
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/dist.py", line 263, in fetch_build_eggs
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/pkg_resources.py", line 568, in resolve
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/pkg_resources.py", line 806, in best_match
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/pkg_resources.py", line 818, in obtain
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/dist.py", line 313, in fetch_build_egg
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/command/easy_install.py", line 609, in easy_install
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/command/easy_install.py", line 639, in install_item
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/command/easy_install.py", line 825, in install_eggs
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/command/easy_install.py", line 1031, in build_and_install
File "/usr/local/uvcdat/2.2.0/lib/python2.7/site-packages/setuptools-1.4-py2.7.egg/setuptools/command/easy_install.py", line 1019, in run_setup
distutils.errors.DistutilsError: Setup script exited with error: command 'gcc' failed with exit status 1
Sorry...
This action did not complete successfully
Please re-run this task until successful before continuing further
Also please review the installation FAQ it may assist you
https://github.com/ESGF/esgf.github.io/wiki/ESGFNode%7CFAQ
Failed building wheel for Pillow
This error seems unavoidable but it also seems that it doesn't affect the esgf functionality.
